Getting Started with ModeltimeSource:
tidymodels made easy! This short
tutorial shows how you can use:
Modeltime models like
prophet_boost(), and more
Parsnip models like
…to perform classical time series analysis and machine learning
in one framework! See “Model
List” for the full list of
For those that prefer video tutorials, we have an 11-minute YouTube Video that walks you through the Modeltime Workflow.
(Click to Watch on YouTube)
The Modeltime Workflow
Here’s the general process and where the functions fit.
Just follow the
modeltime workflow, which is detailed in
6 convenient steps:
- Collect data and split into training and test sets
- Create & Fit Multiple Models
- Add fitted models to a Model Table
- Calibrate the models to a testing set.
- Perform Testing Set Forecast & Accuracy Evaluation
- Refit the models to Full Dataset & Forecast Forward
Let’s go through a guided tour to kick the tires on
Time Series Forecasting Example
Load libraries to complete this short tutorial.
library(xgboost) library(tidymodels) library(modeltime) library(tidyverse) library(lubridate) library(timetk) # This toggles plots from plotly (interactive) to ggplot (static) interactive <- FALSE
Step 1 - Collect data and split into training and test sets.
We can visualize the dataset.
m750 %>% plot_time_series(date, value, .interactive = interactive)
Let’s split the data into training and test sets using
# Split Data 80/20 splits <- initial_time_split(m750, prop = 0.9)
Step 2 - Create & Fit Multiple Models
We can easily create dozens of forecasting models by combining
parsnip. We can also use the
workflows interface for adding preprocessing! Your
forecasting possibilities are endless. Let’s get a few basic models
- Exponential Smoothing
- Linear Regression
- MARS (Multivariate Adaptive Regression Splines)
Important note: Handling Date Features
Modeltime models (e.g.
arima_reg()) are created
with a date or date time feature in the model. You will see that most
models include a formula like
fit(value ~ date, data).
Parsnip models (e.g.
should not have date features, but may contain derivatives of dates
(e.g. month, year, etc). You will often see formulas like
fit(value ~ as.numeric(date) + month(date), data).
Model 1: Auto ARIMA (Modeltime)
First, we create a basic univariate ARIMA model using “Auto Arima”
Model 2: Boosted Auto ARIMA (Modeltime)
Next, we create a boosted ARIMA using
Boosting uses XGBoost to model the ARIMA errors. Note that model formula
contains both a date feature and derivatives of date - ARIMA uses the
date - XGBoost uses the derivatives of date as regressors
Normally I’d use a preprocessing workflow for the month features
using a function like
timetk to help reduce the complexity of the parsnip formula
# Model 2: arima_boost ---- model_fit_arima_boosted <- arima_boost( min_n = 2, learn_rate = 0.015 ) %>% set_engine(engine = "auto_arima_xgboost") %>% fit(value ~ date + as.numeric(date) + factor(month(date, label = TRUE), ordered = F), data = training(splits)) #> frequency = 12 observations per 1 year
Model 3: Exponential Smoothing (Modeltime)
Next, create an Error-Trend-Season (ETS) model using an Exponential
Smoothing State Space model. This is accomplished with
# Model 3: ets ---- model_fit_ets <- exp_smoothing() %>% set_engine(engine = "ets") %>% fit(value ~ date, data = training(splits)) #> frequency = 12 observations per 1 year
Model 4: Prophet (Modeltime)
We’ll create a
prophet model using
# Model 4: prophet ---- model_fit_prophet <- prophet_reg() %>% set_engine(engine = "prophet") %>% fit(value ~ date, data = training(splits)) #> Disabling weekly seasonality. Run prophet with weekly.seasonality=TRUE to override this. #> Disabling daily seasonality. Run prophet with daily.seasonality=TRUE to override this.
Model 5: Linear Regression (Parsnip)
We can model time series linear regression (TSLM) using the
linear_reg() algorithm from
following derivatives of date are used:
Trend: Modeled using
Seasonal: Modeled using
# Model 5: lm ---- model_fit_lm <- linear_reg() %>% set_engine("lm") %>% fit(value ~ as.numeric(date) + factor(month(date, label = TRUE), ordered = FALSE), data = training(splits))
Model 6: MARS (Workflow)
We can model a Multivariate Adaptive Regression Spline model using
mars(). I’ve modified the process to use a
workflow to standardize the preprocessing of the features
that are provided to the machine learning model (mars).
# Model 6: earth ---- model_spec_mars <- mars(mode = "regression") %>% set_engine("earth") recipe_spec <- recipe(value ~ date, data = training(splits)) %>% step_date(date, features = "month", ordinal = FALSE) %>% step_mutate(date_num = as.numeric(date)) %>% step_normalize(date_num) %>% step_rm(date) wflw_fit_mars <- workflow() %>% add_recipe(recipe_spec) %>% add_model(model_spec_mars) %>% fit(training(splits)) #> Loading required package: Formula #> Loading required package: plotmo #> Loading required package: plotrix #> #> Attaching package: 'plotrix' #> The following object is masked from 'package:scales': #> #> rescale #> Loading required package: TeachingDemos
OK, with these 6 models, we’ll show how easy it is to forecast.
Step 3 - Add fitted models to a Model Table.
The next step is to add each of the models to a Modeltime Table using
modeltime_table(). This step does some basic checking to
make sure each of the models are fitted and that organizes into a
scalable structure called a “Modeltime Table”
that is used as part of our forecasting workflow.
We have 6 models to add. A couple of notes before moving on:
- Note that some of the models have tunable parameters.
- It’s expected that tuning and parameter selection is performed prior to incorporating into a Modeltime Table.
- If you try to add an unfitted model, the
modeltime_table()will complain (throw an informative error) saying you need to
models_tbl <- modeltime_table( model_fit_arima_no_boost, model_fit_arima_boosted, model_fit_ets, model_fit_prophet, model_fit_lm, wflw_fit_mars ) models_tbl #> # Modeltime Table #> # A tibble: 6 × 3 #> .model_id .model .model_desc #> <int> <list> <chr> #> 1 1 <fit[+]> ARIMA(0,1,1)(0,1,1) #> 2 2 <fit[+]> ARIMA(0,1,1)(0,1,1) W/ XGBOOST ERRORS #> 3 3 <fit[+]> ETS(M,A,A) #> 4 4 <fit[+]> PROPHET #> 5 5 <fit[+]> LM #> 6 6 <workflow> EARTH
Step 4 - Calibrate the model to a testing set.
Calibrating adds a new column,
the test predictions and residuals inside. A few notes on
- Calibration is how confidence intervals and accuracy metrics are determined
- Calibration Data is simply forecasting predictions and residuals that are calculated from out-of-sample data.
- After calibrating, the calibration data follows the data through the forecasting workflow.
calibration_tbl <- models_tbl %>% modeltime_calibrate(new_data = testing(splits)) calibration_tbl #> # Modeltime Table #> # A tibble: 6 × 5 #> .model_id .model .model_desc .type .calibration_data #> <int> <list> <chr> <chr> <list> #> 1 1 <fit[+]> ARIMA(0,1,1)(0,1,1) Test <tibble [31 × 4]> #> 2 2 <fit[+]> ARIMA(0,1,1)(0,1,1) W/ XGBOO… Test <tibble [31 × 4]> #> 3 3 <fit[+]> ETS(M,A,A) Test <tibble [31 × 4]> #> 4 4 <fit[+]> PROPHET Test <tibble [31 × 4]> #> 5 5 <fit[+]> LM Test <tibble [31 × 4]> #> 6 6 <workflow> EARTH Test <tibble [31 × 4]>
Step 5 - Testing Set Forecast & Accuracy Evaluation
There are 2 critical parts to an evaluation.
- Visualizing the Forecast vs Test Data Set
- Evaluating the Test (Out of Sample) Accuracy
5A - Visualizing the Forecast Test
Visualizing the Test Error is easy to do using the interactive plotly visualization (just toggle the visibility of the models using the Legend).
calibration_tbl %>% modeltime_forecast( new_data = testing(splits), actual_data = m750 ) %>% plot_modeltime_forecast( .legend_max_width = 25, # For mobile screens .interactive = interactive )
From visualizing the test set forecast:
- Models 1&2: ARIMA & ARIMA Boost are performing well. Both models have “auto” components because we used Auto ARIMA. The XGBoost component has parameters that were specified. We can possibly get better accuracy by tuning, but because the ARIMA component is working well on this data, additional improvement may be low.
- Model 3: ETS(M,A,A) is performing the best. The 80% confidence interval is the most narrow of the bunch, indicating the hold out set is modeled well.
- Model 4: PROPHET is comparable to the ARIMA models, but has a slightly wider test error confidence interval.
- Model 5: LM is over-shooting the local trend. This is because the trend component is a simple linear line, which doesn’t account for the change points.
- Model 6: EARTH is overfitting the local trend. This is because we did not tune the number of change points, so the algorithm is auto-calculating the change points.
5B - Accuracy Metrics
We can use
modeltime_accuracy() to collect common
accuracy metrics. The default reports the following metrics using
MAE - Mean absolute error,
MAPE - Mean absolute percentage error,
MASE - Mean absolute scaled error,
SMAPE - Symmetric mean absolute percentage error,
RMSE - Root mean squared error,
RSQ - R-squared,
These of course can be customized following the rules for creating
new yardstick metrics, but the defaults are very useful. Refer to
default_forecast_accuracy_metrics() to learn more.
To make table-creation a bit easier, I’ve included
table_modeltime_accuracy() for outputing results in either
reactable) or static (
calibration_tbl %>% modeltime_accuracy() %>% table_modeltime_accuracy( .interactive = interactive )
|2||ARIMA(0,1,1)(0,1,1) W/ XGBOOST ERRORS||Test||147.04||1.37||0.50||1.39||191.84||0.93|
From the accuracy metrics:
- Model 3: ETS is clearly the winner here with MAE of 77
- Model 6: MARS is over-fitting the local trend. This comes out in the R-Squared of 0.55.
Step 6 - Refit to Full Dataset & Forecast Forward
The final step is to refit the models to the full dataset using
modeltime_refit() and forecast them forward.
refit_tbl <- calibration_tbl %>% modeltime_refit(data = m750) refit_tbl %>% modeltime_forecast(h = "3 years", actual_data = m750) %>% plot_modeltime_forecast( .legend_max_width = 25, # For mobile screens .interactive = interactive )
Refitting - What happened?
The models have all changed! (Yes - this is the point of refitting)
- The LM model looks much better now because the linear trend line has now been fit to new data that follows the longer term trend.
- The EARTH model has a trend that is more representative of the near-term trend.
- The PROPHET model has a trend that is very similar to the EARTH model (this is because both modeling algorithms use changepoints to model trend, and prophet’s auto algorithm seems to be doing a better job at adapting).
- The ETS model has changed from (M,A,A) to (A,A,A).
- The ARIMA model have been updated and better capture the upswing.
This is the (potential) benefit of refitting.
More often than not refitting is a good idea. Refitting:
- Retrieves your model and preprocessing steps
- Refits the model to the new data
- Recalculates any automations. This includes:
- Recalculating the long-term trend for Linear Model
- Recalculating the changepoints for the Earth Model
- Recalculating the ARIMA and ETS parameters
- Preserves any parameter selections. This includes:
- XGBoost Parameters in the Boosted ARIMA
min_n = 2,
learn_rate = 0.015.
- Any other defaults that are not automatic calculations are used.
- XGBoost Parameters in the Boosted ARIMA
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